Name: align_split
Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
Maintainer: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
License: BSD 3-clause
Copyright: 2006-2013, FU Berlin
Status: stable
Description: Dynamic programming based split alignment.
 This module contains the implementation of the splitAlignment() function.
 .
 This function allows the so-called split alignment of one or two sequences
 against a reference sequence.  This is very useful for the detection of
 inserted sequence in the non-reference sequence.
